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All functions

addCwres()
Add CWRES
addNpde()
NPDE calculation for nlmixr2
addTable()
Add table information to nlmixr2 fit object without tables
assertNlmixrFit()
Assert that this is a nlmixr2 fit object
assertNlmixrFitData()
Assert that this is a nlmixr2 fit data object
bobyqaControl()
Control for bobyqa estimation method in nlmixr2
boxCox() iBoxCox() yeoJohnson() iYeoJohnson()
Cox Box, Yeo Johnson and inverse transformation
cholSE()
Generalized Cholesky Matrix Decomposition
foceiControl()
Control Options for FOCEi
getValidNlmixrControl() getValidNlmixrCtl()
Get valid nlmixr control object
lbfgsb3cControl()
Control for lbfgsb3c estimation method in nlmixr2
n1qn1Control()
Control for n1qn1 estimation method in nlmixr2
newuoaControl()
Control for newuoa estimation method in nlmixr2
nlmControl()
nlmixr2 defaults controls for nlm
nlminbControl()
nlmixr2 nlminb defaults
nlmixr2 nlmixr nlmixr2.function nlmixr2.rxUi nlmixr2.nlmixr2FitCore nlmixr2.nlmixr2FitData
nlmixr2 fits population PK and PKPD non-linear mixed effects models.
nlmixr2AllEst()
Show all the current estimation methods
nlmixr2AugPredSolve() augPred(<nlmixr2FitData>)
Augmented Prediction for nlmixr2 fit
nlmixr2CreateOutputFromUi()
Create nlmixr output from the UI
nlmixr2Est()
Generic for nlmixr2 estimation methods
nlmixr2Gill83()
Get the optimal forward difference interval by Gill83 method
nlmixr2Hess()
Calculate Hessian
nlmixr2Keywords
A list and description of the fields in the nlmxir2 object
nlmixr2Logo()
Messages the nlmixr2 logo...
nlmixr2NlmeControl() nlmeControl()
Control Values for nlme Fit with extra options for nlmixr
nlmixr2Validate() nmTest()
Validate nlmixr2
nlmixr2Version()
Display nlmixr2's version
nlmixrAddObjectiveFunctionDataFrame()
Add objective function data frame to the current objective function
nlmixrAddTiming()
Manually add time to a nlmixr2 object
nlmixrCbind()
nlmixrCbind
nlmixrClone()
Clone nlmixr environment
nlmixrWithTiming()
Time a part of a nlmixr operation and add to nlmixr object
nlsControl()
nlmixr2 defaults controls for nls
nmNearPD()
C++ implementation of Matrix's nearPD
nmObjGetControl()
Get control object from fit
nmObjGetEstimationModel()
Get the estimation model for a fit object depending on the object type
nmObjGetFoceiControl()
Method for getting focei compatible control object from nlmixr object
nmObjGetIpredModel() nmObjGetEstimationModel(<saem>) nmObjGetEstimationModel(<default>)
Get the ipred model for a fit object depending on the object type
nmObjGetPredOnly()
Get the pred-only model for a fit depending on the object type
nmObjHandleControlObject()
Handle the control object
nmObjHandleModelObject()
Handle Model Object
nmObjUiSetCompressed()
Set if the nlmixr2 object will return a compressed ui
nmsimplex()
Nelder-Mead simplex search
ofv()
Return the objective function
optimControl()
nlmixr2 optim defaults
print(<saemFit>)
Print an SAEM model fit summary
residuals(<nlmixr2FitData>)
Extract residuals from the FOCEI fit
saemControl()
Control Options for SAEM
setCov()
Set the covariance type based on prior calculated covariances
setOfv() getOfvType()
Set/get Objective function type for a nlmixr2 object
sqrtm()
Return the square root of general square matrix A
summary(<saemFit>)
Print an SAEM model fit summary
tableControl()
Output table/data.frame options
uobyqaControl()
Control for uobyqa estimation method in nlmixr2
vpcSim()
VPC simulation