Package index • nlmixr2est

All functions

addCwres(): Add CWRES

addNpde(): NPDE calculation for nlmixr2

addTable(): Add table information to nlmixr2 fit object without tables

assertNlmixrFit(): Assert that this is a nlmixr2 fit object

assertNlmixrFitData(): Assert that this is a nlmixr2 fit data object

bobyqaControl(): Control for bobyqa estimation method in nlmixr2

boxCox() iBoxCox() yeoJohnson() iYeoJohnson(): Cox Box, Yeo Johnson and inverse transformation

cholSE(): Generalized Cholesky Matrix Decomposition

.augPredIpredModel(): Augment Prediction for Ipred Model

.nlmixrPreprocessLiteralFix(): This literally fixes parameters in the model

.preProcessDataUi(): Preprocess the zero omegas

.preProcessZeroOmega(): Preprocess the zero omegas

foceiControl(): Control Options for FOCEi

getValidNlmixrControl() getValidNlmixrCtl(): Get valid nlmixr control object

lbfgsb3cControl(): Control for lbfgsb3c estimation method in nlmixr2

n1qn1Control(): Control for n1qn1 estimation method in nlmixr2

newuoaControl(): Control for newuoa estimation method in nlmixr2

nlmControl(): nlmixr2 defaults controls for nlm

nlminbControl(): nlmixr2 nlminb defaults

nlmixr2() nlmixr(): nlmixr2 fits population PK and PKPD non-linear mixed effects models.

nlmixr2AllEst(): Show all the current estimation methods

nlmixr2AugPredSolve() augPred(<nlmixr2FitData>): Augmented Prediction for nlmixr2 fit

nlmixr2CreateOutputFromUi(): Create nlmixr output from the UI

nlmixr2Est(): Generic for nlmixr2 estimation methods

nlmixr2Gill83(): Get the optimal forward difference interval by Gill83 method

nlmixr2Hess(): Calculate Hessian

nlmixr2Keywords: A list and description of the fields in the nlmxir2 object

nlmixr2Logo(): Messages the nlmixr2 logo...

nlmixr2NlmeControl() nlmeControl(): Control Values for nlme Fit with extra options for nlmixr

nlmixr2Validate() nmTest(): Validate nlmixr2

nlmixr2Version(): Display nlmixr2's version

nlmixrAddObjectiveFunctionDataFrame(): Add objective function data frame to the current objective function

nlmixrAddTiming(): Manually add time to a nlmixr2 object

nlmixrCbind(): nlmixrCbind

nlmixrClone(): Clone nlmixr environment

nlmixrWithTiming(): Time a part of a nlmixr operation and add to nlmixr object

nlsControl(): nlmixr2 defaults controls for nls

nmNearPD(): C++ implementation of Matrix's nearPD

nmObjGetControl(): Get control object from fit

nmObjGetEstimationModel(): Get the estimation model for a fit object depending on the object type

nmObjGetFoceiControl(): Method for getting focei compatible control object from nlmixr object

nmObjGetIpredModel() nmObjGetEstimationModel(<saem>) nmObjGetEstimationModel(<default>): Get the ipred model for a fit object depending on the object type

nmObjGetPredOnly(): Get the pred-only model for a fit depending on the object type

nmObjHandleControlObject(): Handle the control object

nmObjHandleModelObject(): Handle Model Object

nmObjUiSetCompressed(): Set if the nlmixr2 object will return a compressed ui

nmsimplex(): Nelder-Mead simplex search

ofv(): Return the objective function

optimControl(): nlmixr2 optim defaults

print(<saemFit>): Print an SAEM model fit summary

residuals(<nlmixr2FitData>): Extract residuals from the FOCEI fit

saemControl(): Control Options for SAEM

setCov(): Set the covariance type based on prior calculated covariances

setOfv() getOfvType(): Set/get Objective function type for a nlmixr2 object

sqrtm(): Return the square root of general square matrix A

summary(<saemFit>): Print an SAEM model fit summary

tableControl(): Output table/data.frame options

uobyqaControl(): Control for uobyqa estimation method in nlmixr2

vpcSim(): VPC simulation