Package index
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addCwres() - Add CWRES
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addNpde() - NPDE calculation for nlmixr2
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addTable() - Add table information to nlmixr2 fit object without tables
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agqControl() - Control options for the agq estimation method
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assertNlmixrFit() - Assert that this is a nlmixr2 fit object
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assertNlmixrFitData() - Assert that this is a nlmixr2 fit data object
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bobyqaControl() - Control for bobyqa estimation method in nlmixr2
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boxCox()iBoxCox()yeoJohnson()iYeoJohnson() - Cox Box, Yeo Johnson and inverse transformation
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cholSE() - Generalized Cholesky Matrix Decomposition
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.augPredIpredModel() - Augment Prediction for Ipred Model
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.nlmixr0preProcessCovariatesPresent() - Preprocess Covariates needed (or other data items)
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.nlmixrPreprocessLiteralFix() - This literally fixes parameters in the model
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.preProcessDataUi() - Preprocess the zero omegas
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.preProcessZeroOmega() - Preprocess the zero omegas
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foControl() - Control options for the FO estimation method
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foceControl() - Control options for the foce estimation method
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foceiControl() - Control Options for FOCEi
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foiControl() - Control options foir the FOI estimation method
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getValidNlmixrControl()getValidNlmixrCtl() - Get valid nlmixr control object
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laplaceControl() - Control options for the Laplace estimation method
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lbfgsb3cControl() - Control for lbfgsb3c estimation method in nlmixr2
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n1qn1Control() - Control for n1qn1 estimation method in nlmixr2
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newuoaControl() - Control for newuoa estimation method in nlmixr2
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nlmControl() - nlmixr2 defaults controls for nlm
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nlminbControl() - nlmixr2 nlminb defaults
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nlmixr2AllEst() - Show all the current estimation methods
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nlmixr2AugPredSolve()augPred(<nlmixr2FitData>) - Augmented Prediction for nlmixr2 fit
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nlmixr2CreateOutputFromUi() - Create nlmixr output from the UI
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nlmixr2Est() - Generic for nlmixr2 estimation methods
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nlmixr2Gill83() - Get the optimal forward difference interval by Gill83 method
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nlmixr2Hess() - Calculate Hessian
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nlmixr2Keywords - A list and description of the fields in the nlmxir2 object
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nlmixr2Logo() - Messages the nlmixr2 logo...
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nlmixr2NlmeControl()nlmeControl() - Control Values for nlme Fit with extra options for nlmixr
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nlmixr2Validate()nmTest() - Validate nlmixr2
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nlmixr2Version() - Display nlmixr2's version
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nlmixr2fix() - Try to fix a nlmixr2 fit
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nlmixrAddObjectiveFunctionDataFrame() - Add objective function data frame to the current objective function
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nlmixrAddTiming() - Manually add time to a nlmixr2 object
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nlmixrCbind() - nlmixrCbind
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nlmixrClone() - Clone nlmixr environment
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nlmixrWithTiming() - Time a part of a nlmixr operation and add to nlmixr object
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nlsControl() - nlmixr2 defaults controls for nls
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nmNearPD() - C++ implementation of Matrix's nearPD
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nmObjGetControl() - Get control object from fit
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nmObjGetEstimationModel() - Get the estimation model for a fit object depending on the object type
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nmObjGetFoceiControl() - Method for getting focei compatible control object from nlmixr object
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nmObjGetIpredModel()nmObjGetEstimationModel(<saem>)nmObjGetEstimationModel(<default>) - Get the ipred model for a fit object depending on the object type
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nmObjGetPredOnly() - Get the pred-only model for a fit depending on the object type
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nmObjHandleControlObject() - Handle the control object
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nmObjHandleModelObject() - Handle Model Object
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nmObjUiSetCompressed() - Set if the nlmixr2 object will return a compressed ui
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nmsimplex() - Nelder-Mead simplex search
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ofv() - Return the objective function
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optimControl() - nlmixr2 optim defaults
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posthocControl() - Control options for the posthoc estimation method
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print(<saemFit>) - Print an SAEM model fit summary
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residuals(<nlmixr2FitData>) - Extract residuals from the FOCEI fit
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rmEta() - Remove an eta from the model
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saemControl() - Control Options for SAEM
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setCov() - Set the covariance type based on prior calculated covariances
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setOfv()getOfvType() - Set/get Objective function type for a nlmixr2 object
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sqrtm() - Return the square root of general square matrix A
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summary(<saemFit>) - Print an SAEM model fit summary
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tableControl() - Output table/data.frame options
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uobyqaControl() - Control for uobyqa estimation method in nlmixr2
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vpcSim() - VPC simulation