Read a nonmem xml and create output similar to the nmlst()
Examples
nmxml(system.file("mods/cpt/runODE032.xml", package="nonmem2rx"))
#> $theta
#> theta1 theta2 theta3 theta4 theta5
#> 1.3703404 4.1981491 1.3800349 3.8765734 0.1964461
#>
#> $omega
#> eta1 eta2 eta3 eta4
#> eta1 0.1012514 0.00000000 0.0000000 0.00000000
#> eta2 0.0000000 0.09938724 0.0000000 0.00000000
#> eta3 0.0000000 0.00000000 0.1013027 0.00000000
#> eta4 0.0000000 0.00000000 0.0000000 0.07304975
#>
#> $sigma
#> eps1
#> eps1 1
#>
#> $cov
#> theta1 theta2 theta3 theta4 theta5
#> theta1 8.876810e-04 -1.055098e-04 1.844162e-04 -1.202337e-04 5.278300e-08
#> theta2 -1.055098e-04 8.714095e-04 -1.061946e-04 -5.066632e-05 -1.565618e-05
#> theta3 1.844162e-04 -1.061946e-04 2.993363e-03 1.652516e-04 5.993313e-06
#> theta4 -1.202337e-04 -5.066632e-05 1.652516e-04 1.213465e-03 -2.539912e-05
#> theta5 5.278300e-08 -1.565618e-05 5.993313e-06 -2.539912e-05 9.942182e-06
#> eta1 -4.712728e-05 4.696667e-05 -3.642709e-05 2.547962e-05 -8.168847e-06
#> omega.1.2 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
#> omega.1.3 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
#> omega.1.4 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
#> eta2 -7.371560e-05 2.566338e-05 -8.083493e-05 1.369999e-05 -4.365635e-06
#> omega.2.3 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
#> omega.2.4 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
#> eta3 6.633832e-05 -8.190016e-05 5.489848e-04 1.683555e-04 1.591222e-06
#> omega.3.4 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
#> eta4 -9.496613e-06 1.101079e-04 -3.065372e-04 -9.128974e-05 3.187703e-06
#> eps1 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
#> eta1 omega.1.2 omega.1.3 omega.1.4 eta2 omega.2.3
#> theta1 -4.712728e-05 0 0 0 -7.371560e-05 0
#> theta2 4.696667e-05 0 0 0 2.566338e-05 0
#> theta3 -3.642709e-05 0 0 0 -8.083493e-05 0
#> theta4 2.547962e-05 0 0 0 1.369999e-05 0
#> theta5 -8.168847e-06 0 0 0 -4.365635e-06 0
#> eta1 1.692964e-04 0 0 0 8.751806e-06 0
#> omega.1.2 0.000000e+00 0 0 0 0.000000e+00 0
#> omega.1.3 0.000000e+00 0 0 0 0.000000e+00 0
#> omega.1.4 0.000000e+00 0 0 0 0.000000e+00 0
#> eta2 8.751806e-06 0 0 0 1.512503e-04 0
#> omega.2.3 0.000000e+00 0 0 0 0.000000e+00 0
#> omega.2.4 0.000000e+00 0 0 0 0.000000e+00 0
#> eta3 3.487139e-05 0 0 0 4.315929e-07 0
#> omega.3.4 0.000000e+00 0 0 0 0.000000e+00 0
#> eta4 1.366281e-05 0 0 0 -1.950959e-05 0
#> eps1 0.000000e+00 0 0 0 0.000000e+00 0
#> omega.2.4 eta3 omega.3.4 eta4 eps1
#> theta1 0 6.633832e-05 0 -9.496613e-06 0
#> theta2 0 -8.190016e-05 0 1.101079e-04 0
#> theta3 0 5.489848e-04 0 -3.065372e-04 0
#> theta4 0 1.683555e-04 0 -9.128974e-05 0
#> theta5 0 1.591222e-06 0 3.187703e-06 0
#> eta1 0 3.487139e-05 0 1.366281e-05 0
#> omega.1.2 0 0.000000e+00 0 0.000000e+00 0
#> omega.1.3 0 0.000000e+00 0 0.000000e+00 0
#> omega.1.4 0 0.000000e+00 0 0.000000e+00 0
#> eta2 0 4.315929e-07 0 -1.950959e-05 0
#> omega.2.3 0 0.000000e+00 0 0.000000e+00 0
#> omega.2.4 0 0.000000e+00 0 0.000000e+00 0
#> eta3 0 9.590290e-04 0 -1.297699e-04 0
#> omega.3.4 0 0.000000e+00 0 0.000000e+00 0
#> eta4 0 -1.297699e-04 0 5.101895e-04 0
#> eps1 0 0.000000e+00 0 0.000000e+00 0
#>
#> $objf
#> [1] 20167.64
#>
#> $nobs
#> [1] 2280
#>
#> $nsub
#> [1] 120
#>
#> $nmtran
#> [1] "\n\n WARNINGS AND ERRORS (IF ANY) FOR PROBLEM 1\n\n (WARNING 2) NM-TRAN INFERS THAT THE DATA ARE POPULATION.\n"
#>
#> $nonmem
#> [1] "7.4.3"
#>
#> $termInfo
#> [1] "\n0MINIMIZATION SUCCESSFUL\n NO. OF FUNCTION EVALUATIONS USED: 320\n NO. OF SIG. DIGITS IN FINAL EST.: 2.5\n"
#>
#> $time
#> [1] 100.95
#>
#> $control
#> [1] ""
#> [2] "$PROB BOLUS_2CPT_CLV1QV2 SINGLE DOSE FOCEI (120 Ind/2280 Obs) runODE032"
#> [3] "$INPUT ID TIME DV LNDV MDV AMT EVID DOSE V1I CLI QI V2I SSX IIX SD CMT"
#> [4] "$DATA BOLUS_2CPT.csv IGNORE=@ IGNORE (SD.EQ.0)"
#> [5] "$SUBR ADVAN13 TOL=6"
#> [6] "$MODEL"
#> [7] " COMP=(CENTRAL,DEFOBS,DEFDOSE)"
#> [8] " COMP=(PERI)"
#> [9] "$PK"
#> [10] " CL=EXP(THETA(1)+ETA(1))"
#> [11] " V=EXP(THETA(2)+ETA(2))"
#> [12] " Q=EXP(THETA(3)+ETA(3))"
#> [13] " V2=EXP(THETA(4)+ETA(4))"
#> [14] " V1=V"
#> [15] " S1=V"
#> [16] "\t\t K21=Q/V2"
#> [17] "\t\t K12=Q/V"
#> [18] "$DES"
#> [19] " DADT(1)= K21*A(2)-K12*A(1)-CL*A(1)/V1"
#> [20] " DADT(2)=-K21*A(2)+K12*A(1) \t\t"
#> [21] "$ERROR"
#> [22] " IPRED = F"
#> [23] " RESCV = THETA(5)"
#> [24] " W = IPRED*RESCV"
#> [25] " IRES = DV-IPRED"
#> [26] " IWRES = IRES/W"
#> [27] " Y = IPRED+W*EPS(1)"
#> [28] "$THETA 1.6 ;log Cl"
#> [29] "$THETA 4.5 ;log Vc"
#> [30] "$THETA 1.6 ;log Q"
#> [31] "$THETA 4 ;log Vp"
#> [32] "$THETA (0,0.3,1) ;RSV"
#> [33] "$OMEGA 0.15 0.15 0.15 0.15"
#> [34] "$SIGMA 1 FIX"
#> [35] "$EST NSIG=2 SIGL=6 PRINT=5 MAX=9999 NOABORT POSTHOC METHOD=COND INTER NOOBT"
#> [36] "$COV"
#> [37] "$TABLE ID TIME LNDV MDV AMT EVID DOSE V1I CLI QI V2I CL V Q V2 ETA1 ETA2 ETA3 ETA4"
#> [38] " IPRED IRES IWRES CWRESI"
#> [39] " ONEHEADER NOPRINT FILE=runODE032.csv"
#>