Package index • babelmixr2

All functions

as.nlmixr2() as.nlmixr(): Convert an object to a nlmixr2 fit object
babel.poped.database(): Expand a babelmixr2 PopED database
babelBpopIdx(): Get the bpop_idx by variable name for a poped database created by babelmixr2
bblDatToMonolix() bblDatToNonmem() bblDatToRxode() bblDatToMrgsolve() bblDatToPknca(): Convert nlmixr2-compatible data to other formats (if possible)
.nlmerNlmerFun(): Surrogate gradient function for lme4::nlmer
.setupPopEDdatabase(): Setup the poped database
fmeMcmcControl(): Control for fmeMcmc estimation method in nlmixr2
getStandardColNames(): Determine standardized rxode2 column names from data
modelUnitConversion(): Unit conversion for pharmacokinetic models
monolixControl(): Monolix Controller for nlmixr2
nlmixr2Est(<nlmer>): nlmixr2 estimation using lme4::nlmer
nlmixr2Est(<pknca>): Estimate starting parameters using PKNCA
nlmixr2NlmerControl() nlmerControl(): Control for nlmer estimation method in nlmixr2
nonmemControl(): NONMEM estimation control
pkncaControl(): PKNCA estimation control
popedControl(): Control for a PopED design task
popedGetMultipleEndpointModelingTimes() popedMultipleEndpointIndexDataFrame(): Get Multiple Endpoint Modeling Times
popedMultipleEndpointResetTimeIndex(): Reset the Global Time Indexer for Multiple Endpoint Modeling
pseudoOptimControl(): Control for fmeMcmc estimation method in nlmixr2
rxToMonolix(): Convert RxODE syntax to monolix syntax
rxToNonmem(): Convert RxODE syntax to NONMEM syntax
rxUiGet(<loadPruneNlmer>): Load pruned nlmer model into symengine (no sensitivity promotion)
rxUiGet(<loadPruneNlmerSens>): Load pruned nlmer model into symengine (with sensitivity promotion)
rxUiGet(<nlmerEnv>): Full nlmer symengine environment with sensitivities
rxUiGet(<nlmerFormula>): Build the full 3-part nlmer formula
rxUiGet(<nlmerHdTheta>): Compute d(f)/d(THETA[i]) for all nlmer parameters
rxUiGet(<nlmerModel0>): nlmer base model (saem-dropped etas, THETA[i] prefix, nlme error lines)
rxUiGet(<nlmerParams>): params() string for the nlmer THETA[i]-indexed model
rxUiGet(<nlmerRandomFormula>): Build the random-effects part (part 3) of the nlmer 3-part formula
rxUiGet(<nlmerSensModel>): Compiled nlmer sensitivity model (prediction + gradients)
rxUiGet(<nlmerStart>): Starting values for nlmer fixed effects
rxUiGet(<nlmerThetaS>): Compute d(state)/d(THETA[i]) sensitivities for nlmer
rxUiGet(<nlmerThetas>): Get the structural params to estimate for nlmer (= saemParamsToEstimate)
saemixControl(): Control for saemix estimation method in nlmixr2
simplifyUnit(): Simplify units by removing repeated units from the numerator and denominator